miRBase entry: sme-mir-190b

Stem-loop sme-mir-190b


Accession
MI0005165
Description
Schmidtea mediterranea sme-mir-190b precursor miRNA


Sequence

gcacuucaaaucgUGAUAUGUUUGGUUUAUUGGUGAguguaaacugauuucuaacACCAUUAGCCUAAUGUAUCGUGUcauugagugc
((((((.....(((((((((((.((((...((((((((....))).........)))))..)))).))))))))))).....))))))

Structure
      caaau           U    UAU     ---------   g 
gcacuu     cgUGAUAUGUU GGUU   UGGUG         Agu u
||||||     ||||||||||| ||||   |||||         |||  
cgugag     GUGCUAUGUAA CCGA   ACCAc         uca a
      uuacU           U    -UU     aaucuuuag   a 


Annotation confidence Not enough data
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Genome context
Contig258: 85956-86043 [+]

Database links

Mature sme-miR-190b-5p

Accession MIMAT0004003
Description Schmidtea mediterranea sme-miR-190b-5p mature miRNA
Sequence 14 - UGAUAUGUUUGGUUUAUUGGUGA - 36
Evidence experimental
cloned [1], 454 [2], Illumina [2-3]

Mature sme-miR-190b-3p

Accession MIMAT0004004
Description Schmidtea mediterranea sme-miR-190b-3p mature miRNA
Sequence 56 - ACCAUUAGCCUAAUGUAUCGUGU - 78
Evidence experimental
cloned [1], 454 [2], Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491