Stem-loop sme-mir-277b

Accession

MI0005169

Description

Schmidtea mediterranea sme-mir-277b precursor miRNA

Literature search

1 open access papers mention sme-mir-277b
(2 sentences)

Sequence

gguuguauugaucUUGAUCAGAAAUGCAGCUUCagagaaaucacugugAAAAUGCAUUAUCUGGCCAAGAaaaugaagccu
((((.((((..(((((.(((((((((((..((((.((......)).))))..)))))).))))).))))).)))).)))).

Structure

-    g    ga     A     -      GC    g  aa 
 gguu uauu  ucUUG UCAGA AAUGCA  UUCa ag  a
 |||| ||||  ||||| ||||| ||||||  |||| ||   
 ccga guaa  AGAAC GGUCU UUACGU  AAgu uc  u
u    a    -a     C     A      AA    g  ac 

Annotation confidence Low

Genome context

Contig23836: 4203-4283 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-277b

Mature sme-miR-277b-5p

• Accession: MIMAT0004008
• Description: Schmidtea mediterranea sme-miR-277b-5p mature miRNA
• Sequence: 14 - UUGAUCAGAAAUGCAGCUUC - 33
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature sme-miR-277b-3p

• Accession: MIMAT0004009
• Description: Schmidtea mediterranea sme-miR-277b-3p mature miRNA
• Sequence: 49 - AAAAUGCAUUAUCUGGCCAAGA - 70
• Evidence: experimental ; cloned [1], Northern [1], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491