Stem-loop sequence sme-mir-277c

Accession MI0005170
Description Schmidtea mediterranea miR-277c stem-loop
Stem-loop 
       auauua            -u      au    -   aa 
aucauuu      aucauaucagau  ugcauu  uauu aug  u
|||||||      ||||||||||||  ||||||  |||| |||  u
uaguaaa      uaguauggucua  acguaa  auaa uac  a
       -guuua            uu      --    c   aa
Get sequence
Genome context
Coordinates (WUSTL3.1) Overlapping transcripts
Contig520: 104019-104106 [+]
intergenic
Clustered miRNAs
< 10kb from sme-mir-277c
sme-mir-277d Contig520: 103909-103989 [+]
sme-mir-277c Contig520: 104019-104106 [+]

Mature sequence sme-miR-277c-5p

Accession MIMAT0012120
Previous IDs sme-miR-277c*
Sequence

14 -  

aucauaucagauuugcauuauu

 - 35

Get sequence
Evidence experimental; 454 [2], Solexa [2-3]

Mature sequence sme-miR-277c-3p

Accession MIMAT0004010
Previous IDs sme-miR-277c
Sequence

55 -  

uaaaugcauuaucugguaugau

 - 76

Get sequence
Evidence experimental; cloned [1], Northern [1], 454 [2], Solexa [2]

References

1
PMID:16849698 "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology" Palakodeti D, Smielewska M, Graveley BR RNA. 12:1640-1649(2006).
2
PMID:19564616 "High-resolution profiling and discovery of planarian small RNAs" Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N Proc Natl Acad Sci U S A. 106:11546-11551(2009).
3
PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).