miRBase entry: sme-mir-748

Stem-loop sme-mir-748


Accession
MI0005174
Description
Schmidtea mediterranea sme-mir-748 precursor miRNA


Sequence

caaucacauuaugUCCUUAUUAUAUUGCUGUCAAGUaagcacuacUGGACGGAAGUGUAAUGAGgguaaaauugugaaa
...(((((...(((((((((((((((.(((((.((((.....)))).))))).)))))))))))))))....)))))..

Structure
caa     -uua               G     A    a 
   ucaca    ugUCCUUAUUAUAUU CUGUC AGUa g
   |||||    ||||||||||||||| ||||| |||| c
   agugu    auggGAGUAAUGUGA GGCAG Ucau a
-aa     uaaa               A     G    c 


Annotation confidence Not enough data
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Genome context
Contig4720: 35037-35115 [+]

Database links

Mature sme-miR-748-5p

Accession MIMAT0012123
Description Schmidtea mediterranea sme-miR-748-5p mature miRNA
Sequence 14 - UCCUUAUUAUAUUGCUGUCAAGU - 36
Evidence experimental
Illumina [2-3]

Mature sme-miR-748-3p

Accession MIMAT0004015
Description Schmidtea mediterranea sme-miR-748-3p mature miRNA
Sequence 46 - UGGACGGAAGUGUAAUGAG - 64
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491