Stem-loop sequence sme-mir-752

Accession

MI0005178 (change log)

Description

Schmidtea mediterranea miR-752 stem-loop

Stem-loop

   a      -au  -   -    a   ga     u    a -         a    aguu 
5'  uugauu   ag uua ucua uuu  aaacc ccaa g ugauuguga uaaa    u
    ||||||   || ||| |||| |||  ||||| |||| | ||||||||| ||||    u
3'  agcuaa   uc agu agau gaa  uuugg gguu c acugacacu auuu    a
   a      cau  u   g    -   ag     u    a g         a    aauu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WUSTL3.1): Contig1374: 32325-32438 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sme-mir-752

• sme-mir-71b: Contig1374: 32561-32660 [-]
• sme-mir-2d: Contig1374: 32443-32550 [-]
• sme-mir-752: Contig1374: 32325-32438 [-]
• sme-mir-13: Contig1374: 32236-32295 [-]

Database links

• miRBase Tracker:MI0005178

Mature sequence sme-miR-752-5p

• Accession: MIMAT0012125
• Sequence: 27 - accuccaaagugauugugaau - 47
• Evidence: experimental; 454 [2], Illumina [2-3]

Mature sequence sme-miR-752-3p

• Accession: MIMAT0004019
• Previous IDs: sme-miR-752
• Sequence: 71 - agucagcauuggugguuu - 88
• Evidence: experimental; cloned [1], 454 [2], Illumina [2-3]

References

1. PMID:16849698 "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology" Palakodeti D, Smielewska M, Graveley BR RNA. 12:1640-1649(2006).
2. PMID:19564616 "High-resolution profiling and discovery of planarian small RNAs" Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N Proc Natl Acad Sci U S A. 106:11546-11551(2009).
3. PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).