miRBase entry: cel-mir-785

Stem-loop cel-mir-785


Accession
MI0005185
Description
Caenorhabditis elegans cel-mir-785 precursor miRNA
Gene family
MIPF0000896; mir-785


Sequence

8692 reads, 71 reads per million, 15 experiments
gcucuuuuucucacccaucAGCACAGAAUUUUUCGCUAACAgaaaccucaaaacaaugUAAGUGAAUUGUUUUGUGUAGAugguggaaaugagc
((((..((((.((((.(((.(((((((((..((((((.(((...............))).))))))..))))))))).))))))))))).))))

Structure
    uu    u    c   A         UU      A   gaaacc 
gcuc  uuuc cacc auc GCACAGAAU  UUCGCU ACA      u
||||  |||| |||| ||| |||||||||  |||||| |||      c
cgag  aaag gugg uAG UGUGUUUUG  AAGUGA Ugu      a
    -u    -    -   A         UU      A   aacaaa 


Annotation confidence Not enough data
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Genome context
chrX: 3004668-3004761 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cel-mir-785
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-785-3p

Accession MIMAT0004220
Description Caenorhabditis elegans cel-miR-785-3p mature miRNA
Sequence 59 - UAAGUGAAUUGUUUUGUGUAGA - 80
Evidence experimental
454 [1], Illumina [2], CLIPseq [3]
Database links
Predicted targets

Mature cel-miR-785-5p

Accession MIMAT0032015
Description Caenorhabditis elegans cel-miR-785-5p mature miRNA
Sequence 20 - AGCACAGAAUUUUUCGCUAACA - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  2. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  3. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179