Stem-loop cel-mir-788

Accession

MI0005188

Description

Caenorhabditis elegans cel-mir-788 precursor miRNA

Gene family

MIPF0000974; mir-788

Sequence

13204 reads, 190 reads per million, 15 experiments

gcucacuuuUCCGCUUCUAACUUCCAUUUGCAGaguucaaguaaucuGGAAAUGGAUUAGAAUCGUGGAAAaguuagu
(((.((((((((((((((((..(((((((.((((..........)))).)))))))))))))..)))))))))).)))

Structure

   c          --      CU       G    guuc 
gcu acuuuUCCGC  UUCUAA  UCCAUUU CAGa    a
||| ||||||||||  ||||||  ||||||| ||||     
uga ugaAAAGGUG  AAGAUU  AGGUAAA Gucu    a
   u          CU      --       G    aaug 

Annotation confidence High

Genome context

chrX: 8485294-8485371 [-]

Mature cel-miR-788-5p

• Accession: MIMAT0004223
• Description: Caenorhabditis elegans cel-miR-788-5p mature miRNA
• Sequence: 10 - UCCGCUUCUAACUUCCAUUUGCAG - 33
• Evidence: experimental ; 454 [1], Illumina [2,4], CLIPseq [3]

Mature cel-miR-788-3p

• Accession: MIMAT0015240
• Description: Caenorhabditis elegans cel-miR-788-3p mature miRNA
• Sequence: 48 - GGAAAUGGAUUAGAAUCGUGGAAA - 71
• Evidence: experimental ; CLIPseq [3], Illumina [4]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


4. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577