Stem-loop sequence cel-mir-789-2

Accession MI0005190
Description Caenorhabditis elegans miR-789-2 stem-loop
Gene family MIPF0000373; mir-789
Stem-loop 
u    -  aa   g        a                   uca  a 
 gucc ug  ggc gacaauug ugacucaggcagggacuaa   ug u
 |||| ||  ||| |||||||| |||||||||||||||||||   || u
 cagg gc  ccg cuguuaac acuggguccgucccugauu   gc g
a    c  cc   g        c                   -ua  u
Get sequence
Deep sequencing
215 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
IV: 17309270-17309366 [-]
antisense
T28F3.9 ; T28F3.9; intron 2
T28F3.9 ; T28F3.9; intron 2
T28F3.9 ; T28F3.9; intron 2

Mature sequence cel-miR-789

Accession MIMAT0004224
Sequence

60 -  

ucccugccugggucaccaauugu

 - 82

Get sequence
Deep sequencing 418 reads, 6 experiments
Evidence experimental; cloned [1], Solexa [2]
Validated targets
Predicted targets

References

1
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).