miRBase entry: cel-mir-792

Stem-loop cel-mir-792


Accession
MI0005193
Description
Caenorhabditis elegans cel-mir-792 precursor miRNA


Sequence

274 reads, 57 reads per million, 12 experiments
aaguuggucaacguuUGAGAGUUCAAAAGAUUUAGCAAUUuuauacgagugaaaUUGAAAUCUCUUCAACUUUCAGAcguuuucugauuu
(((((((..((((((((((((((.((.((((((..(((((((((....))))))))))))))).)).))))))))))))))..)))))))

Structure
       uc              C  A      AG         a 
aaguugg  aacguuUGAGAGUU AA AGAUUU  CAAUUuuau c
|||||||  |||||||||||||| || ||||||  |||||||||  
uuuaguc  uugcAGACUUUCAA UU UCUAAA  GUUaaagug g
       uu              C  C      --         a 


Annotation confidence Not enough data
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Genome context
chrV: 3042092-3042181 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-792
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-792-3p

Accession MIMAT0004227
Description Caenorhabditis elegans cel-miR-792-3p mature miRNA
Sequence 55 - UUGAAAUCUCUUCAACUUUCAGA - 77
Evidence experimental
454 [1], Illumina [2-3]
Database links
Predicted targets

Mature cel-miR-792-5p

Accession MIMAT0020351
Description Caenorhabditis elegans cel-miR-792-5p mature miRNA
Sequence 16 - UGAGAGUUCAAAAGAUUUAGCAAUU - 40
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  2. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  3. PubMed ID: 21307183
    Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
    "Warf MB, Johnson WE, Bass BL"
    "RNA (2011) 17:563-577