Stem-loop sequence cel-mir-796

Accession MI0005197
Description Caenorhabditis elegans miR-796 stem-loop
Stem-loop 
     aa       c        a uu      a    -   ca 
acucu  ugacaag uggaaugu g  gagguu guaa aag  c
|||||  ||||||| |||||||| |  |||||| |||| |||  u
ugaga  acuguuc gccuugca c  uuccaa cauu uuc  a
     aa       a        - cg      a    g   au
Get sequence
Deep sequencing
32 reads, 5 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 1798923-1799011 [-]
intergenic

Mature sequence cel-miR-796

Accession MIMAT0004231
Sequence

16 -  

uggaauguaguugagguuaguaa

 - 38

Get sequence
Deep sequencing 32 reads, 5 experiments
Evidence experimental; cloned [1], Solexa [2]
Validated targets
Predicted targets

References

1
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).