Stem-loop osa-MIR812c

Accession

MI0005235

Description

Oryza sativa osa-MIR812c precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812c
(15 sentences)

Sequence

390 reads, 206 reads per million, 2 experiments

gguuuccgcgucuaauguuugaccguccaucuuauuugaaaaaaauuaaaaacauaagucaugcauaaaauauuauucauguuuuaucauuuaacaauaauaauaacaccaaucauaaaaaaaaauuauauaaGACGGACGGUUAAACGUUGGACacggaaacc
((((((((.(((((((((((((((((((.((((((.(((............((....)).(((.(((((((((.....))))))))))))...................................))).)))))).))))))))))))))))))).))))))))

Structure

        c                   a      u   --------------aaaaaauuaaaaacauaaguc   c         u 
gguuuccg gucuaauguuugaccgucc ucuuau uga                                   aug auaaaauau a
|||||||| ||||||||||||||||||| |||||| |||                                   ||| ||||||||| u
ccaaaggc CAGGUUGCAAAUUGGCAGG AGaaua auu                                   uac uauuuugua u
        a                   C      u   aaaaaaaaauacuaaccacaauaauaauaacaauu   -         c 

Annotation confidence Not enough data

Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

Chr6: 26260307-26260470 [+]

Mature osa-miR812c

• Accession: MIMAT0004051
• Description: Oryza sativa osa-miR812c mature miRNA
• Sequence: 134 - GACGGACGGUUAAACGUUGGAC - 155
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116