Stem-loop sequence osa-MIR812c

Accession

MI0005235 (change log)

Description

Oryza sativa miR812c stem-loop

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812c
(15 sentences)

Stem-loop

           c                   a      u   aaaaaauuaaaaacauaagucaugcauaaaauauuauucaug 
5' gguuuccg gucuaauguuugaccgucc ucuuau uga                                          u
   |||||||| ||||||||||||||||||| |||||| |||                                           
3' ccaaaggc cagguugcaaauuggcagg agaaua auu                                          u
           a                   c      u   aaaaaaaaauacuaaccacaauaauaauaacaauuuacuauu 

Deep sequencing

4970 reads, 1.2e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

• Coordinates (MSU7): Chr6: 26260307-26260470 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005235

Mature sequence osa-miR812c

• Accession: MIMAT0004051
• Sequence: 134 - gacggacgguuaaacguuggac - 155
• Deep sequencing: 4378 reads, 2 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS00003701FC_39947

References

1. PMID:16959252 "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development" Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH FEBS Lett. 580:5111-5116(2006).