Stem-loop osa-MIR812d

Accession

MI0005236

Description

Oryza sativa osa-MIR812d precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

10 open access papers mention osa-MIR812d
(16 sentences)

Sequence

163 reads, 133 reads per million, 2 experiments

cguauccaacauuugaucaucugccuuauucgaaaaauuuauaaaaaaaaacaagucacgcauaaaguauuauucauguuuuaucauauaagaacaauaaaaauacuaaucauaaaaaaaguaaauaaGACGGACGGUUAAACGUUGGACacg
(((.((((((.(((((((.((((.((((((.......(((((............((...))....((((((.((..((((((........))))))..)).))))))....))))).......)))))).)))).))))))).)))))).)))

Structure

   a      a       a    c      cgaaaaa     aaaaaaaaacaagucacgcauaa      a  ca      auc 
cgu uccaac uuugauc ucug cuuauu       uuuau                       aguauu uu  uguuuu   a
||| |||||| ||||||| |||| ||||||       |||||                       |||||| ||  ||||||    
gca AGGUUG AAAUUGG AGGC Gaauaa       aaaua                       ucauaa aa  acaaga   u
   C      C       C    A      augaaaa     -------------------cuaa      a  ua      aua 

Annotation confidence Not enough data

Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

Chr7: 22395223-22395375 [+]

Mature osa-miR812d

• Accession: MIMAT0004052
• Description: Oryza sativa osa-miR812d mature miRNA
• Sequence: 129 - GACGGACGGUUAAACGUUGGAC - 150
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116