Stem-loop osa-MIR812e

Accession

MI0005237

Description

Oryza sativa osa-MIR812e precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812e
(15 sentences)

Sequence

1466 reads, 308 reads per million, 2 experiments

guuuuagugcccaacuuugaccguccgucuuauuugaaaauuuuuuuauuacuauuuuuauuguuauuagaugauaaaauauaaauauuacuucaugcgugacuuaauuuuuaaaaaaauuucauaaaauuuuuaaauaaGACGGACGGUUAAACGUUGGACacggaaac
(((((.(((.((((((((((((((((((((((((((((((((((...........((((((((((....))))))))))..((((.((((..(((....)))..)))).))))............))))))))))))))))))))))))))))).))))).))).)))))

Structure

     a   c     -                             uuuauuacuauuuuuauuguuauuagaugauaaaaua    u    cu   u 
guuuu gug ccaac uuugaccguccgucuuauuugaaaauuuu                                     uaaa auua  uca g
||||| ||| ||||| |||||||||||||||||||||||||||||                                     |||| ||||  |||  
caaag caC GGUUG AAAUUGGCAGGCAGaauaaauuuuuaaaa                                     auuu uaau  agu c
     g   A     C                             -------------------------uacuuuaaaaaa    u    uc   g 

Annotation confidence Low

Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

Chr8: 16401146-16401315 [+]

Mature osa-miR812e

• Accession: MIMAT0004053
• Description: Oryza sativa osa-miR812e mature miRNA
• Sequence: 141 - GACGGACGGUUAAACGUUGGAC - 162
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116