miRBase entry: osa-MIR814a

Stem-loop osa-MIR814a


Accession
MI0005239
Description
Oryza sativa osa-MIR814a precursor miRNA
Gene family
MIPF0000351; MIR814

Literature search
3 open access papers mention osa-MIR814a
(8 sentences)

Sequence

130 reads, 52 reads per million, 2 experiments
accuaguaccggacgagaCACUUCAUAGUACAACGAAUCUggacaguaagccuguccagauucguuguacuaugaagugucauauccgguccuaagu
...(((.((((((.(.((((((((((((((((((((((((((((((.....)))))))))))))))))))))))))))))).).)))))).)))...

Structure
acc   u      c a                              u 
   uag accgga g gaCACUUCAUAGUACAACGAAUCUggacag a
   ||| |||||| | |||||||||||||||||||||||||||||| a
   auc uggccu u cugugaaguaucauguugcuuagaccuguc g
uga   c      a a                              c 


Annotation confidence Not enough data
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Comments
miR814 was misnamed miR573 by Luo et al [1].

Genome context
Chr1: 22375030-22375126 [+]

Database links

Mature osa-miR814a

Accession MIMAT0004055
Description Oryza sativa osa-miR814a mature miRNA
Sequence 19 - CACUUCAUAGUACAACGAAUCU - 40
Evidence experimental
cloned [1], Northern [1]
Database links

References

  1. PubMed ID: 16959252
    Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
    "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
    "FEBS Lett (2006) 580:5111-5116