miRBase entry: osa-MIR821b

Stem-loop osa-MIR821b


Accession
MI0005267
Description
Oryza sativa osa-MIR821b precursor miRNA
Gene family
MIPF0000350; MIR821

Literature search
1 open access papers mention osa-MIR821b
(6 sentences)

Sequence

46 reads, 8 reads per million, 2 experiments
cuaaaugauuucaauugaaaAAGUCAUCAACAAAAAAGUUGAAUaacuuaucaagaucuaaaacuuuuauuuuuguuauuucuucauccgacgaaauguuaguaauauuauucacaaauuuuacauauauguguuaaaguuuauaaaaccagauaagagauaugacaauuuuauaaauaauguuaccaucacuuugucguaugaagaaauaaccacaauaaaaguuuuagaucuugaagaguuauucaacuuuguuguugaugacuuuuucaguugauaucauuuag
(((((((((.(((((((((((((((((((((((.(((((((((((((((.(((((((((((((((((((((...(((((((((((((.(((((((.((...(((((((((((...(((((.(.(((((...((((...((((...))))..))))....)))))).)))))....)))))))))))...)).))))))).)))))))))))))...))))))))))))))))))))).))))))))))))))).))))))))))))))))))))))).)))))))))

Structure
         u                       A               a                     uuu             c       a  uua           -cac     u a     -aug    aaa    a 
cuaaaugau ucaauugaaaAAGUCAUCAACAA AAAGUUGAAUaacuu ucaagaucuaaaacuuuuauu   guuauuucuucau cgacgaa ug   guaauauuauu    aaauu u cauau    uguu   guuu  
||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   ||||||||||||| ||||||| ||   |||||||||||    ||||| | |||||    ||||   |||| u
gauuuacua aguugacuuuuucaguaguuguu uuucaacuuauugag aguucuagauuuugaaaauaa   caauaaagaagua gcuguuu ac   cauuguaauaa    uuuaa a guaua    auag   caaa  
         u                       g               a                     cac             u       c  uac           auau     c -     gaga    -ac    a 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
miR821 was misnamed miR584 by Luo et al [1].

Genome context
Chr7: 16417225-16417511 [+]

Database links

Mature osa-miR821b

Accession MIMAT0004083
Description Oryza sativa osa-miR821b mature miRNA
Sequence 21 - AAGUCAUCAACAAAAAAGUUGAAU - 44
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 16959252
    Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
    "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
    "FEBS Lett (2006) 580:5111-5116