miRBase entry: osa-MIR821c

Stem-loop osa-MIR821c


Accession
MI0005268
Description
Oryza sativa osa-MIR821c precursor miRNA
Gene family
MIPF0000350; MIR821

Literature search
1 open access papers mention osa-MIR821c
(5 sentences)

Sequence

79 reads, 22 reads per million, 2 experiments
ucaacugaaaAAGUCAUCAACAAAAAAGUUGAAUaacucaucaacaucuaaaacuuuuauuuugguuauuucuucauacgacaaagugauaguaacauuauucacaaaauugacauaacucuuaucugguuuuauaaacuauaacacauauauguaaaauuugugaauaauuuucuaacauuuugucagaugaagaaacaacaaaaauaaaaguuuuagaucuugaugaguuauucaacuuuguuguugaugacuuuuucaauuga
((((.((((((((((((((((((.((((((((((((((((((((.((((((((((((((((((.(((.(((((((((..(((((((((.(((.((.((((((((((((.((.(((((.........((((((...)))))).........))))).)).)))))))))))).))))).)))))))))..))))))))).))).)))))))))))))))))).)))))))))))))))))))).)))))))))))))))))).))))

Structure
    c                  A                    c                  g   a         ac         a   u  c            a  g     acucuuauc      u 
ucaa ugaaaAAGUCAUCAACAA AAAGUUGAAUaacucaucaa aucuaaaacuuuuauuuu guu uuucuucau  gacaaagug uag aa auuauucacaaa uu acaua         ugguuu  
|||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| |||||||||  ||||||||| ||| || |||||||||||| || |||||         |||||| a
aguu acuuuuucaguaguuguu uuucaacuuauugaguaguu uagauuuugaaaauaaaa caa aaagaagua  cuguuuuac auc uu uaauaaguguuu aa uguau         aucaaa  
    a                  g                    c                  a   c         ga         a   -  u            a  a     auacacaau      u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
miR821 was misnamed miR584 by Luo et al [1].

Genome context
Chr8: 19925129-19925394 [-]

Database links

Mature osa-miR821c

Accession MIMAT0004084
Description Oryza sativa osa-miR821c mature miRNA
Sequence 11 - AAGUCAUCAACAAAAAAGUUGAAU - 34
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 16959252
    Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
    "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
    "FEBS Lett (2006) 580:5111-5116