miRBase entry: mdo-mir-103-1

Stem-loop mdo-mir-103-1


Accession
MI0005284
Description
Monodelphis domestica mdo-mir-103-1 precursor miRNA
Gene family
MIPF0000024; mir-103


Sequence

178223 reads, 3052 reads per million, 5 experiments
uugucuUCGGCUUCUUUACAGUGCUGCCUUGuugcauauggaucaAGCAGCAUUGUACAGGGCUAUGAagacauug
.(((((((((((.((.(((((((((((.(((.(.(....).).)))))))))))))).))))))..)))))))...

Structure
--u       --    U  U           C   u g a 
   ugucuUC  GGCU CU UACAGUGCUGC UUG u c u
   |||||||  |||| || ||||||||||| ||| | |  
   acagaAG  UCGG GA AUGUUACGACG Aac a g a
guu       UA    -  C           -   u g u 


Annotation confidence High
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Genome context
chr1: 367063025-367063100 [-]

Database links

Mature mdo-miR-103-3p

Accession MIMAT0004099
Description Monodelphis domestica mdo-miR-103-3p mature miRNA
Sequence 46 - AGCAGCAUUGUACAGGGCUAUGA - 68
Evidence experimental
Microarray [1], PCR [1], Illumina [2]
Database links
Predicted targets

Mature mdo-miR-103-1-5p

Accession MIMAT0026658
Description Monodelphis domestica mdo-miR-103-1-5p mature miRNA
Sequence 7 - UCGGCUUCUUUACAGUGCUGCCUUG - 31
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45