miRBase entry: mdo-mir-125b-1

Stem-loop mdo-mir-125b-1


Accession
MI0005291
Description
Monodelphis domestica mdo-mir-125b-1 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

129640 reads, 2169 reads per million, 5 experiments
acuuuuccuagUCCCUGAGACCCUAACUUGUGAggcuuuucagcgacaaccACAGGUCAGGCUCUUGGGACCUaggcggagg
.((((.(((((((((.((((.(((.(((((((..(((....)))......))))))).))).)))))))).))))).)))).

Structure
a    u     -    U    C   A       ----Ag   u 
 cuuu ccuag UCCC GAGA CCU ACUUGUG      gcu u
 |||| ||||| |||| |||| ||| |||||||      |||  
 gagg ggaUC AGGG UUCU GGA UGGACAc      cga u
g    c     C    -    C   C       caacag   c 


Annotation confidence High
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Genome context
chr4: 1003541-1003622 [+]

Database links

Mature mdo-miR-125b-5p

Accession MIMAT0004103
Description Monodelphis domestica mdo-miR-125b-5p mature miRNA
Sequence 12 - UCCCUGAGACCCUAACUUGUGA - 33
Evidence experimental
Microarray [1], PCR [1], Illumina [2]
Database links
Predicted targets

Mature mdo-miR-125b-1-3p

Accession MIMAT0026661
Description Monodelphis domestica mdo-miR-125b-1-3p mature miRNA
Sequence 52 - ACAGGUCAGGCUCUUGGGACCU - 73
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45