miRBase entry: mdo-mir-152

Stem-loop mdo-mir-152


Accession
MI0005306
Description
Monodelphis domestica mdo-mir-152 precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
1 open access papers mention mdo-mir-152
(1 sentences)

Sequence

37424 reads, 649 reads per million, 5 experiments
cccggcccAGGUUCUGUGAUACACUCCGACUuagacucuggagcagUCAGUGCAUGACAGAACUUGGGcuugg
((.((((((((((((((.((.((((..((((.............)))))))).)).)))))))))))))).))

Structure
  c              G  A    CC    uagac 
cc ggcccAGGUUCUGU AU CACU  GACU     u
|| |||||||||||||| || ||||  ||||     c
gg ucGGGUUCAAGACA UA GUGA  CUga     u
  u              G  C    --    cgagg 


Annotation confidence High
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Genome context
chr2: 200362981-200363053 [-]

Database links

Mature mdo-miR-152-3p

Accession MIMAT0004117
Description Monodelphis domestica mdo-miR-152-3p mature miRNA
Sequence 47 - UCAGUGCAUGACAGAACUUGGG - 68
Evidence experimental
Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-152-5p

Accession MIMAT0026671
Description Monodelphis domestica mdo-miR-152-5p mature miRNA
Sequence 9 - AGGUUCUGUGAUACACUCCGACU - 31
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45