Stem-loop mdo-mir-219-1

Accession

MI0005323

Description

Monodelphis domestica mdo-mir-219-1 precursor miRNA

Gene family

MIPF0000044; mir-219

Sequence

26437 reads, 702 reads per million, 5 experiments

cagggguuccgccgcUGAUUGUCCAAACGCAAUUCUugugcgagucugcagccaaccgAGAAUUGUGGCUGGACAUCUGUggcugagcucc
..(((((((.(((((.(((.(((((..(((((((((((((((....))))......)))))))))))..)))))))).))))).)))))))

Structure

ca       c     U   U     AA           ------    a 
  gggguuc gccgc GAU GUCCA  CGCAAUUCUug      ugcg g
  ||||||| ||||| ||| |||||  |||||||||||      ||||  
  ccucgag cggUG CUA CAGGU  GUGUUAAGAgc      acgu u
--       u     U   -     CG           caaccg    c 

Annotation confidence High

Genome context

chr1: 454138610-454138700 [-]

Mature mdo-miR-219-5p

• Accession: MIMAT0004134
• Description: Monodelphis domestica mdo-miR-219-5p mature miRNA
• Sequence: 16 - UGAUUGUCCAAACGCAAUUCU - 36
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-219-1-3p

• Accession: MIMAT0026681
• Description: Monodelphis domestica mdo-miR-219-1-3p mature miRNA
• Sequence: 59 - AGAAUUGUGGCUGGACAUCUGU - 80
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45