miRBase entry: mdo-let-7i

Stem-loop mdo-let-7i


Accession
MI0005332
Description
Monodelphis domestica mdo-let-7i precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

27084 reads, 462 reads per million, 5 experiments
cuggcUGAGGUAGUAGUUUGUGCUGUuggucggguugugacauugcccgcuguggagauaacUGCGCAAGCUACUGCCUUGCUa
.((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))

Structure
c    U                 U   --------  u     ugu 
 uggc GAGGUAGUAGUUUGUGC GUu        gg cgggu   g
 |||| ||||||||||||||||| |||        || |||||   a
 aUCG UUCCGUCAUCGAACGCG caa        uc gcccg   c
-    -                 U   uagaggug  -     uua 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr8: 22252146-22252229 [+]

Database links

Mature mdo-let-7i-5p

Accession MIMAT0004143
Description Monodelphis domestica mdo-let-7i-5p mature miRNA
Sequence 6 - UGAGGUAGUAGUUUGUGCUGU - 26
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mdo-let-7i-3p

Accession MIMAT0026688
Description Monodelphis domestica mdo-let-7i-3p mature miRNA
Sequence 63 - UGCGCAAGCUACUGCCUUGCU - 83
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45