miRBase entry: mdo-mir-183

Stem-loop mdo-mir-183


Accession
MI0005335
Description
Monodelphis domestica mdo-mir-183 precursor miRNA
Gene family
MIPF0000066; mir-183


Sequence

14169 reads, 216 reads per million, 5 experiments
acuccuguucugugUAUGGCACUGGUAGAAUUCACUGugaaaacacacuaucagUGAAUUACCAAAGGGCCAUAAAcagagcagagaa
..(((((((((((.((((((..(((((..((((((((..(........)..)))))))))))))....)))))).))))))))).)).

Structure
ac  -         g      --AC     GA        ug aaa 
  uc cuguucugu UAUGGC    UGGUA  AUUCACUG  a   c
  || ||||||||| ||||||    |||||  ||||||||  |    
  ag gacgagacA AUACCG    ACCAU  UAAGUgac  u   a
-a  a         A      GGAA     --        ua cac 


Annotation confidence Not enough data
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Genome context
chr8: 189668265-189668352 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mdo-mir-183
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-183-5p

Accession MIMAT0004146
Description Monodelphis domestica mdo-miR-183-5p mature miRNA
Sequence 15 - UAUGGCACUGGUAGAAUUCACUG - 37
Evidence experimental
PCR [1], Illumina [2]
Database links
Predicted targets

Mature mdo-miR-183-3p

Accession MIMAT0026691
Description Monodelphis domestica mdo-miR-183-3p mature miRNA
Sequence 55 - UGAAUUACCAAAGGGCCAUAAA - 76
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45