miRBase entry: mdo-mir-181b-1

Stem-loop mdo-mir-181b-1


Accession
MI0005344
Description
Monodelphis domestica mdo-mir-181b-1 precursor miRNA
Gene family
MIPF0000007; mir-181


Sequence

140348 reads, 2479 reads per million, 5 experiments
aaggucacaaucAACAUUCAUUGCUGUCGGUGGGUuuaacuguauggacaagcUCACUGAACAAUGAAUGCAACuguggccccacuu
..(((((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))))))......

Structure
----aa       aucAA         CUG           aa  g 
      ggucaca     CAUUCAUUG   UCGGUGGGUuu  cu u
      |||||||     |||||||||   |||||||||||  ||  
      ccggugu     GUAAGUAAC   AGUCACUcgaa  gg a
uucacc       -CAAC         --A           ca  u 


Annotation confidence High
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Genome context
chr2: 99872867-99872953 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-181b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-181b-5p

Accession MIMAT0004155
Description Monodelphis domestica mdo-miR-181b-5p mature miRNA
Sequence 13 - AACAUUCAUUGCUGUCGGUGGGU - 35
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature mdo-miR-181b-1-3p

Accession MIMAT0026699
Description Monodelphis domestica mdo-miR-181b-1-3p mature miRNA
Sequence 54 - UCACUGAACAAUGAAUGCAAC - 74
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45