miRBase entry: mdo-mir-24-2

Stem-loop mdo-mir-24-2


Accession
MI0005365
Description
Monodelphis domestica mdo-mir-24-2 precursor miRNA
Gene family
MIPF0000041; mir-24


Sequence

83193 reads, 1320 reads per million, 5 experiments
gccuccuGUGCCUACUGAGCUGAAACACAGUugcuuuggauaaacUGGCUCAGUUCAGCAGgaacaggagucu
..(((((((.(((.(((((((((....(((((..........)))))..))))))))).))).)))))))...

Structure
-gc       G   A         AACA     gcuu 
   cuccuGU CCU CUGAGCUGA    CAGUu    u
   ||||||| ||| |||||||||    |||||     
   gaggaca gGA GACUUGACU    GUcaa    g
ucu       a   C         --CG     auag 


Annotation confidence Not enough data
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Genome context
chr3: 446526144-446526216 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mdo-mir-24-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-24-3p

Accession MIMAT0004175
Description Monodelphis domestica mdo-miR-24-3p mature miRNA
Sequence 46 - UGGCUCAGUUCAGCAG - 61
Evidence experimental
Microarray [1], PCR [1]
Database links
Predicted targets

Mature mdo-miR-24-5p

Accession MIMAT0026712
Description Monodelphis domestica mdo-miR-24-5p mature miRNA
Sequence 8 - GUGCCUACUGAGCUGAAACACAGU - 31
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45