miRBase entry: mdo-mir-23b

Stem-loop mdo-mir-23b


Accession
MI0005366
Description
Monodelphis domestica mdo-mir-23b precursor miRNA
Gene family
MIPF0000027; mir-23


Sequence

43680 reads, 725 reads per million, 5 experiments
ggcugcuuGGGUUCCUGGCAUGCUGAUUUgugacuuaagaugaaaAUCACAUUGCCAGGGAUUACCacgcagcc
((((((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))))))

Structure
      u   --          -  C      gugacu 
ggcugc uGG  GUUCCUGGCA UG UGAUUU      u
|||||| |||  |||||||||| || ||||||       
ccgacg aCC  UAGGGACCGU AC ACUAaa      a
      c   AU          U  -      aguaga 


Annotation confidence Not enough data
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Genome context
chr6: 17695901-17695974 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mdo-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-23b-3p

Accession MIMAT0004176
Description Monodelphis domestica mdo-miR-23b-3p mature miRNA
Sequence 46 - AUCACAUUGCCAGGGAUUACC - 66
Evidence experimental
Microarray [1], PCR [1], Illumina [2]
Database links
Predicted targets

Mature mdo-miR-23b-5p

Accession MIMAT0026713
Description Monodelphis domestica mdo-miR-23b-5p mature miRNA
Sequence 9 - GGGUUCCUGGCAUGCUGAUUU - 29
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45