Stem-loop sequence ath-MIR823

Accession MI0005380
Description Arabidopsis thaliana miR823 stem-loop
Gene family MIPF0001135; MIR823
Stem-loop 
aauuucagagauacuaauccaagagauggcggauacguuuuacaauc  g                  a          aau  ga  -     a 
                                               ac aaucuuguaugaucacua ccauuggaac   aa  gu auaua u
                                               || |||||||||||||||||| ||||||||||   ||  || ||||| g
                                               ug uuagaauauacuaguggu ggugaucuug   uu  ca uauau a
cugauuaauuaggguuaucuacccccuauacaaagugacaaugguaa  g                  g          -au  ac  c     g
Get sequence
Deep sequencing
2323 reads, 7 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr3: 4496775-4496965 [-]
intergenic

Mature sequence ath-miR823

Accession MIMAT0004240
Sequence

120 -  

uggguggugaucauauaagau

 - 140

Get sequence
Deep sequencing 2322 reads, 7 experiments
Evidence experimental; 454 [1-2], Northern [1], cloned [2], Solexa [3]
Validated targets

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).
3
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).