Stem-loop ath-MIR829

Accession

MI0005385

Description

Arabidopsis thaliana ath-MIR829 precursor miRNA

Gene family

MIPF0001142; MIR829

Literature search

5 open access papers mention ath-MIR829
(11 sentences)

Sequence

acgucaaaauugauuaacaaaaagucaaugaaucauucuaccaauugacuuguACUUUGAAGCUUUGAUUUGAAccugucaauugguaucaaagcuucuaaaucuuugaAGCUCUGAUACCAAAUGAUGGAAUCAAAUUAAAGCUUCAAGGUAGuagucaucuuggcagagaaaagaaaaagcacuucgaguuuaccaucuugau
........(((((((.......))))))).......(((.((((.(((((..(((((((((((((((((((((..((((((.(((((((((.((((((.........)))))).))))))))).))))))..)))))))))))))))))))))..)))))..)))).)))................(((((........))))).

Structure

acgucaaaauugauuaacaaaaagucaaugaaucau   a    -u     ug                     Ac      a         a      uaa 
                                    ucu ccaa  ugacu  uACUUUGAAGCUUUGAUUUGA  cuguca uugguauca agcuuc   a
                                    ||| ||||  |||||  |||||||||||||||||||||  |||||| ||||||||| ||||||   u
                                    aga gguu  acuga  AUGGAACUUCGAAAUUAAACU  GGUAGU AACCAUAGU UCGAag   c
-uaguucuaccauuugagcuucacgaaaaagaaaag   c    cu     uG                     AA      A         C      uuu 

Annotation confidence Not enough data

Genome context

chr1: 11834022-11834226 [-]

Mature ath-miR829-3p.1

• Accession: MIMAT0004245
• Description: Arabidopsis thaliana ath-miR829-3p.1 mature miRNA
• Sequence: 110 - AGCUCUGAUACCAAAUGAUGGAAU - 133
• Evidence: experimental ; 454 [1], Illumina [3]

Mature ath-miR829-3p.2

• Accession: MIMAT0004246
• Description: Arabidopsis thaliana ath-miR829-3p.2 mature miRNA
• Sequence: 134 - CAAAUUAAAGCUUCAAGGUAG - 154
• Evidence: experimental ; 454 [1-2], cloned [2], Illumina [3]

Mature ath-miR829-5p

• Accession: MIMAT0032019
• Description: Arabidopsis thaliana ath-miR829-5p mature miRNA
• Sequence: 54 - ACUUUGAAGCUUUGAUUUGAA - 74
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


3. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219


4. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701