miRBase entry: ath-MIR830

Stem-loop ath-MIR830


Accession
MI0005386
Description
Arabidopsis thaliana ath-MIR830 precursor miRNA

Literature search
1 open access papers mention ath-MIR830
(1 sentences)

Sequence

cagagucucgcuagugucuuuacuaaacacaaaaucuguaaacgccucgaucuccUCUUCUCCAAAUAGUUUAGGUUagcugacauauaauaauucaauagaccccaguuucuccagauaaccUAACUAUUUUGAGAAGAAGUGaacgaagagcgauuacaaguuaggagagugcuugaauuuugaagaacaucg
(((((((..((.(.(.((((.(((............(((((.(((((((.((.(.(((((((.((((((((.((((((.(((............((....))............))).)))))))))))))).))))))).).)).)).)).))).)))))))).)))).).)))..).))))))..........

Structure
----------      - uc  u g g    u   aaacacaaaauc     a   -  -  a  u c       C        U      g   acauauaauaau  a 
          cagagu c  gc a u ucuu acu            uguaa cgc cu cg uc c UCUUCUC AAAUAGUU AGGUUa cug            uc a
          |||||| |  || | | |||| |||            ||||| ||| || || || | ||||||| |||||||| |||||| |||            ||  
          guuuua g  cg u a agga uga            acauu gcg ga gc aG G AGAAGAG UUUAUCAA Uccaau gac            ag u
gcuacaagaa      a uu  - g g    u   ------------     a   a  a  a  U A       U        -      a   cucuuugacccc  a 


Annotation confidence Not enough data
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Genome context
chr1: 4820355-4820549 [-]

Database links

Mature ath-miR830-5p

Accession MIMAT0004247
Description Arabidopsis thaliana ath-miR830-5p mature miRNA
Sequence 56 - UCUUCUCCAAAUAGUUUAGGUU - 77
Evidence experimental
cloned [2]

Mature ath-miR830-3p

Accession MIMAT0004248
Description Arabidopsis thaliana ath-miR830-3p mature miRNA
Sequence 124 - UAACUAUUUUGAGAAGAAGUG - 144
Evidence experimental
454 [1-2], cloned [2], Illumina [3]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  3. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219