miRBase entry: ath-MIR831

Stem-loop ath-MIR831


Accession
MI0005387
Description
Arabidopsis thaliana ath-MIR831 precursor miRNA
Gene family
MIPF0001132; MIR831


Sequence

gcacaaugcggacagugcuacaagaagagauuuauagagucuuaagagucucaAGAAGCGUACAAGGAGAUGAGGagugaaucaccaaaacaagugguuuugguuugugaaucaccaaaacaagugguuuugguuugugaaucaguaugguuuacccaaaacacuuguuugguguguuuacuucUGAUCUCUUCGUACUCUUCUUGcgauucuaugacacucuacauguaacaucggcaugguuuaccaaaaagccu
.....((((.((...((.((((.(.((((..((((((((((..........(((((((.((((.(((((((.(((((((((((((((((.((((((.((((((..........((((((((.....))))))))..((((((((...))))))))))))))))))))))))))).)))))))))).))))))).)))).))))))).))))))))))..)))).).)))).)))).))))(((((......))))).

Structure
------------gcaca    g  cag  c    a a    au          uuaagagucu       C    A       G          -       a      g      -----------uuugugaauc        a 
                 augc ga   ug uaca g agag  uuauagaguc          caAGAAG GUAC AGGAGAU AGGagugaau caccaaa caagug uuuugg                     accaaaac a
                 |||| ||   || |||| | ||||  ||||||||||          ||||||| |||| ||||||| |||||||||| ||||||| |||||| ||||||                     |||||||| g
                 uacg cu   ac augu c ucuc  aguaucuuag          GUUCUUC CAUG UUCUCUA Ucuucauuug gugguuu guucac aaaacc                     ugguuuug u
uccgaaaaaccauuugg    g  ---  a    a a    ac          ---------c       U    C       G          u       -      -      cauuugguaugacuaaguguu        g 


Annotation confidence Not enough data
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Genome context
chr2: 10247206-10247462 [+]

Database links

Mature ath-miR831-3p

Accession MIMAT0004249
Description Arabidopsis thaliana ath-miR831-3p mature miRNA
Sequence 185 - UGAUCUCUUCGUACUCUUCUUG - 206
Evidence experimental
454 [1]

Mature ath-miR831-5p

Accession MIMAT0032020
Description Arabidopsis thaliana ath-miR831-5p mature miRNA
Sequence 54 - AGAAGCGUACAAGGAGAUGAGG - 75
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 24119003
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
    BMC Genomics (2013) 14:701