miRBase entry: ath-MIR832

Stem-loop ath-MIR832


Accession
MI0005388
Description
Arabidopsis thaliana ath-MIR832 precursor miRNA


Sequence

aagaaagaaaaaauaagugacaaguaacaaacaugagaaaggugaaacuUGCUGGGAUCGGGAAUCGAAAgauccgaaagccagucuuuagaggauucugaacgggcuagugaaaguaaacuugugaugugaccauauugugcaauaugaauguaaguuggugguguggucaucucacaagguggcuaagucaucucacuuauuuucuuaacgaaagcaucagcccguuuagcaucaucuucuugaagcuugccuuucgcaucuuUUGAUUCCCAAUCCAAGCAAGguucaccuuuuuuuuugccaugaccuuuacaaaauauccaaauuuug
...........................((((...(((((((((((..((((((.((((.((((((((((((((.((((((.(((.(((((((((((.(((((((((((.(((..(((...(((((((.((((((((((((..((((..........)))).)))))))))))).)))))))...)))((((......)))).(((((.....)))))))).)))))))))))....)))))).))))).))).)))))).)))))))))))))).)))).))))))..)))))))))))))))............((((((......))))))

Structure
---aagaaagaaaaaauaagugacaaguaa    cau           aa      G    C              c      c   u     -      ---u           a   ----------------------------aa   aaa       u            ug    auga 
                              caaa   gagaaagguga  cuUGCU GGAU GGGAAUCGAAAgau cgaaag cag cuuua gaggau    cugaacgggcu gug                              agu   cuuguga gugaccauauug  caau    a
                              ||||   |||||||||||  |||||| |||| |||||||||||||| |||||| ||| ||||| ||||||    ||||||||||| |||                              |||   ||||||| ||||||||||||  ||||     
                              guuu   uuuuuuccacu  GAACGA CCUA CCCUUAGUUuucua gcuuuc guu gaagu cuucua    gauuugcccga uac                              ucg   gaacacu uacugguguggu  guug    u
guuuuaaaccuauaaaacauuuccaguacc    ---           ug      A    A              c      c   c     u      cuac           c   gaaagcaauucuuuuauucacucuacugaa   gug       c            -g    aaug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 6413010-6413342 [+]

Database links

Mature ath-miR832-5p

Accession MIMAT0004250
Description Arabidopsis thaliana ath-miR832-5p mature miRNA
Sequence 50 - UGCUGGGAUCGGGAAUCGAAA - 70
Evidence experimental
454 [1]

Mature ath-miR832-3p

Accession MIMAT0004251
Description Arabidopsis thaliana ath-miR832-3p mature miRNA
Sequence 266 - UUGAUUCCCAAUCCAAGCAAG - 286
Evidence experimental
454 [1]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425