miRBase entry: ath-MIR833a

Stem-loop ath-MIR833a


Accession
MI0005389
Description
Arabidopsis thaliana ath-MIR833a precursor miRNA
Gene family
MIPF0001186; MIR833

Literature search
2 open access papers mention ath-MIR833a
(3 sentences)

Sequence

ggacguagaugguacucuuacagauggugaucgugaaaacaaacggaggaguuUGUUUGUUGUACUCGGUCUAGUucaaaccaaaacaucuuugcaaauauguaugguuugagcUAGACCGAUGUCAACAAACAAGcugcuucguuuguauucaccaucaacaucuuuaagaaacgcugcaccacuc
((..((((.((....(((((.(((((.((((.(((((.((((((((((.(((((((((((((.((((((((((((((((((((..((((.((....)).)))).)))))))))))))))))).))))))))))))))).)))))))))).))))).)))).))))).)))))..)))))).))....

Structure
----  ac    a  guac     c     g    c     a          g             U  -                  aa    c  u 
    gg  guag ug    ucuua agaug ugau gugaa acaaacggag aguuUGUUUGUUG AC UCGGUCUAGUucaaacca  acau uu g
    ||  |||| ||    ||||| ||||| |||| ||||| |||||||||| ||||||||||||| || ||||||||||||||||||  |||| ||  
    cc  cguc gc    agaau ucuac acua cacuu uguuugcuuc ucGAACAAACAAC UG AGCCAGAUcgaguuuggu  ugua aa c
cuca  -a    -  --aa     u     a    c     a          g             -  U                  -a    u  a 


Annotation confidence Not enough data
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Genome context
chr1: 29525151-29525337 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR833a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR833a-5p

Accession MIMAT0004252
Description Arabidopsis thaliana ath-miR833a-5p mature miRNA
Sequence 54 - UGUUUGUUGUACUCGGUCUAGU - 75
Evidence experimental
454 [1-2], cloned [2]

Mature ath-miR833a-3p

Accession MIMAT0004253
Description Arabidopsis thaliana ath-miR833a-3p mature miRNA
Sequence 115 - UAGACCGAUGUCAACAAACAAG - 136
Evidence experimental
454 [1-2], cloned [2]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219