Stem-loop ath-MIR846

Accession

MI0005402

Description

Arabidopsis thaliana ath-MIR846 precursor miRNA

Gene family

MIPF0001189; MIR846

Literature search

4 open access papers mention ath-MIR846
(12 sentences)

Sequence

caaacaucuugaauccguugagguugaucacgaugaugccacauccgguuuCAUUCAAGGACUUCUAUUCAGaacaaacuucaugauuucugaacuaauuggauaugauaaaugguaacaaguauucacuugcauucaagggacaaaaaaucauugggauauaugauuaugacaaacacgauuggaagcugaaugguugcgggaggcaagcagugggauaaugaucugcaaguggaaacuucuuacuuuuaucauaucccaucagcucgaaagucuugauguuaguuUUGAAUUGAAGUGCUUGAAUUacaccagauuuauugugcucguguaucccgguaaauucgacuaaugaccaa
....(((.(((((((((..((...(((.((((((((......(((.(((...(((((((.(((((.(((((((((.(((.(((.(((((.(((.((.((.((((((((((((.(((((.((((.((((((((((..............((((((........))))))...........(((((....((.(.((.((((.....)))).)).).))....))))))))))))))).)))).))))))))))))))))).)).)).))).))))).))).))).))))))))).))))).)))))))...))).))))))))))).)))....)).)))...))))))...))).....

Structure

-caaa   --c      ---   uu  -ggu   u        ugccac   c   uuC       G     U         a   u   u     c   a  a  u            u     c    a          uucaagggacaaaaaaucauugggauauaugauuaugacaaacac     gaag  g a  g    g 
     cau   uugaau   ccg  ga    uga cacgauga      auc ggu   AUUCAAG ACUUC AUUCAGaac aac uca gauuu uga cu au ggauaugauaaa gguaa aagu uucacuugca                                             gauug    cu a ug uugc g
     |||   ||||||   |||  ||    ||| ||||||||      ||| |||   ||||||| ||||| ||||||||| ||| ||| ||||| ||| || || |||||||||||| ||||| |||| ||||||||||                                             |||||    || | || |||| g
     gua   agcuua   ggc  cu    gcu guguuauu      uag cca   UAAGUUC UGAAG UAAGUUuug uug agu cugaa gcu ga ua ccuauacuauuu ucauu uuca aggugaacgu                                             cuagu    gg u ac aacg a
aacca   auc      aau   -c  augu   c        ------   a   caU       G     U         a   u   u     a   c  c  c            -     c    a          ---------------------------------------------     aaua  g g  g    g 

Annotation confidence Not enough data

Genome context

chr1: 22577375-22577733 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR846

Mature ath-miR846-3p

• Accession: MIMAT0004269
• Description: Arabidopsis thaliana ath-miR846-3p mature miRNA
• Sequence: 288 - UUGAAUUGAAGUGCUUGAAUU - 308
• Evidence: experimental ; 454 [1], Northern [1], cloned [2], Illumina [3]

Mature ath-miR846-5p

• Accession: MIMAT0032023
• Description: Arabidopsis thaliana ath-miR846-5p mature miRNA
• Sequence: 52 - CAUUCAAGGACUUCUAUUCAG - 72
• Evidence: not_experimental

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


3. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219