miRBase entry: ath-MIR851

Stem-loop ath-MIR851


Accession
MI0005406
Description
Arabidopsis thaliana ath-MIR851 precursor miRNA
Gene family
MIPF0001168; MIR851

Literature search
3 open access papers mention ath-MIR851
(4 sentences)

Sequence

uuuucuuucuuuuccuuuucguuugauuuuggaaagcaagggacugucgUCUCGGUUCGCGAUCCACAAGuaaucuuuuguggagauuaugaaaacaaucaucacgagaggcuacgugUGGGUGGCAAACAAAGACGACaaucccuauuccaguuccaucagaacuugaaauaucaugugaacu
.........((((((...((....))....))))))..(((((.((((((((..(((.((.(((((((.(((.((((((((((.((((........)))).)))))))))).))).))))))).)).)))..)))))))).))))).(((.(((((.....))))).)))..............

Structure
uuuucuuucuuuuccuuuucguuugauuuuggaaagca     c        CG   C  G       A   a          a    aug 
                                      aggga ugucgUCU  GUU GC AUCCACA Gua ucuuuugugg gauu   a
                                      ||||| ||||||||  ||| || ||||||| ||| |||||||||| ||||    
                                      ucccu aCAGCAGA  CAA CG UGGGUgu cau ggagagcacu cuaa   a
ucaaguguacuauaaaguucaagacuaccuugaccuua     a        AA   A  G       g   c          a    caa 


Annotation confidence Not enough data
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Genome context
chr3: 19659532-19659715 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR851
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR851-5p

Accession MIMAT0004273
Description Arabidopsis thaliana ath-miR851-5p mature miRNA
Sequence 50 - UCUCGGUUCGCGAUCCACAAG - 70
Evidence experimental
454 [1-2], cloned [2]

Mature ath-miR851-3p

Accession MIMAT0004274
Description Arabidopsis thaliana ath-miR851-3p mature miRNA
Sequence 119 - UGGGUGGCAAACAAAGACGAC - 139
Evidence experimental
454 [1]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219