miRBase entry: ath-MIR824

Stem-loop ath-MIR824


Accession
MI0005409
Description
Arabidopsis thaliana ath-MIR824 precursor miRNA
Gene family
MIPF0000442; MIR824

Literature search
7 open access papers mention ath-MIR824
(25 sentences)

Sequence

uaucaccauuuguacuugaguugucucucaugucUAGACCAUUUGUGAGAAGGGAguuuuuguuuacaccaauaccccccagucucuaaauuuguaagaaguauuaugcucaauuaaggaacauagcuaguucgacauaccauacuacccuuuuuaaaacuauccuauauguuugaugcuagcauagcguaauuuuguguucucauggugcagcaggguuaguuuauuguguaccucuagauauauauucucuugcugcguaggguucccaagcugccaaaaacuuuuaaaaauuagugaucuguuccccaaacccccauucaauaagaaaggucuaccuguagcucacagucacagcuauuagagcuguccuugcuucuuuggguuuacuguuuuaguuaauuaguuacccuaugaaagucugauccuucagaaguuagguauagaaguaagucgauuaaguucauucaugacuuuuccagauguugcauacauaacuuuuuuuauuuguauucgaacuaguccaagccgauucucaaaaucauauaaaaucauuuacaccuuggucaugguagcuaagaauauuguaucuaaaauuggggaguggggagauguuugguuauauucCCUUCUCAUCGAUGGUCUAGAugugcgaggugacucucauggagguaaagaacaauggugau
.(((((((((.((.(((((((((((((.(((((((((((((((.(((((((((((((..........(((((((.((((((.(((((((.((((.....((((((..((((((((((((......((((((((((.((((..(((((...(((((((((...........(((((..(((.((.(((((......((((((((...((((((.(((..........)))))))))...))).)))))......))))).))..)))...)))))..........))))))))).))))).......................((((((((((((.....((((((((..((((((((((.....)))))).(((((((((..((((..((((.((.....)).)))).))))........(((((....)))))..........)))))))))..((......))......))))......)).))))))......)))))))))))).)))))))))))))).......((((.....)))).................)))))))..))..)))....)))))).....)))).))))))).))))).).)).)))))...))))))))))))).))))))))))))))).))))))))))...........))).)))))))))))

Structure
u         u  a   -----------          u               U             uuuuguuuac     -  c -     g       a    uaaga      --au   --  --       -------------------------------aacaua          c    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ca     ccc         cuauccuauau     -au   -a  a     uaauuu     -   cau      g   gguu 
 aucaccauu gu cuu           gaguugucuc caugucUAGACCAUU GUGAGAAGGGAgu          accaa ua c cccca ucucuaa uuug     aguauu    gcu  ca  auuaagg                                     gcuaguucga auac                                                                                                                                                                                                                  uacua   uuuuuaaaa           guuug   gcu  gc uagcg      ugugu ucu   ggugca cag    a
 ||||||||| || |||           |||||||||| ||||||||||||||| |||||||||||||          ||||| || | ||||| ||||||| ||||     ||||||    |||  ||  |||||||                                     |||||||||| ||||                                                                                                                                                                                                                  |||||   |||||||||           |||||   |||  || |||||      ||||| |||   |||||| |||     
 uagugguaa ca gaa           cucaguggag guguAGAUCUGGUAG UACUCUUCCcuua          ugguu gu g ggggu agggguu aaau     uuauaa    cga  gu  ugguucc                                     ugaucaagcu uaug                                                                                                                                                                                                                  gugau   aaaaauuuu           cgaac   ugg  ug gucgu      auaua aga   ccaugu guu    g
-         -  a   auggagguacu          c               C             -------uau     u  a a     g       a    cuaug      gaau   ug  ac       acauuuacuaaaauauacuaaaacucuuagccgaacc          -    uuuauuuuuuucaauacauacguuguagaccuuuucaguacuuacuugaauuagcugaaugaagauauggauugaagacuuccuagucugaaaguaucccauugauuaauugauuuugucauuuggguuucuucguuccugucgagauuaucgacacugacacucgauguccaucuggaaagaauaacuuacccccaaaccccuugucua     --u         -caaaaaccgu     ccu   ga  c     ucucuu     u   ucu      -   auuu 


Annotation confidence Not enough data
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Genome context
chr4: 12625094-12625782 [+]

Database links

Mature ath-miR824-5p

Accession MIMAT0004277
Description Arabidopsis thaliana ath-miR824-5p mature miRNA
Sequence 35 - UAGACCAUUUGUGAGAAGGGA - 55
Evidence experimental
454 [1-2], Northern [1,3], cloned [2], Illumina [4]

Mature ath-miR824-3p

Accession MIMAT0032024
Description Arabidopsis thaliana ath-miR824-3p mature miRNA
Sequence 628 - CCUUCUCAUCGAUGGUCUAGA - 648
Evidence not_experimental

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  3. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219

  4. PubMed ID: 17704216
    MicroRNA-mediated regulation of stomatal development in Arabidopsis
    "Kutter C, Schob H, Stadler M, Meins F Jr, Si-Ammour A"
    "Plant Cell (2007) 19:2417-2429