Stem-loop sequence hsa-mir-675

Accession

MI0005416 (change log)

Symbol

HGNC:MIR675

Description

Homo sapiens miR-675 stem-loop

Gene family

MIPF0000365; mir-675

Literature search

106 open access papers mention hsa-mir-675
(877 sentences)

Stem-loop

          u    u    a      cc      gacu 
5' cccaggg cugg gcgg gagggc  acagug    u
   ||||||| |||| |||| ||||||  ||||||     
3' ggguccc gacu cgcc cucccg  ugucgc    g
          c    -    a      ua      agug 

Deep sequencing

2197 reads, 20.5 reads per million, 112 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr11: 1996759-1996831 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000314380 ; MRPL23-009; intron 5

  ENST00000397297 ; MRPL23-009; intron 5

Database links

• EntrezGene:MIR675
• HGNC:MIR675
• RNAcentral:URS0000691556_9606
• miRBase Tracker:MI0005416

Mature sequence hsa-miR-675-5p

• Accession: MIMAT0004284
• Previous IDs: hsa-miR-675
• Sequence: 10 - uggugcggagagggcccacagug - 32
• Deep sequencing: 1092 reads, 84 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00004E5112_9606
• Predicted targets:
  • TargetMiner:hsa-miR-675-5p
  • TargetScanVert:hsa-miR-675-5p
  • miRDB:hsa-miR-675-5p
  • microrna.org:hsa-miR-675-5p

Mature sequence hsa-miR-675-3p

• Accession: MIMAT0006790
• Previous IDs: hsa-miR-675b;hsa-miR-675*
• Sequence: 45 - cuguaugcccucaccgcuca - 64
• Deep sequencing: 1103 reads, 89 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS000027464B_9606
• Predicted targets:
  • TargetMiner:hsa-miR-675-3p
  • TargetScanVert:hsa-miR-675-3p
  • miRDB:hsa-miR-675-3p
  • microrna.org:hsa-miR-675-3p

References

1. PMID:17237358 "The imprinted H19 noncoding RNA is a primary microRNA precursor" Cai X, Cullen BR RNA. 13:313-316(2007).
2. PMID:18402656 "Hidden layers of human small RNAs" Kawaji H, Nakamura M, Takahashi Y, Sandelin A, Katayama S, Fukuda S, Daub CO, Kai C, Kawai J, Yasuda J, Carninci P, Hayashizaki Y BMC Genomics. 9:157(2008).