miRBase entry: cbr-mir-790-1

Stem-loop cbr-mir-790-1


Accession
MI0005424
Description
Caenorhabditis briggsae cbr-mir-790-1 precursor miRNA
Gene family
MIPF0000362; mir-790


Sequence

aagucccuuccgauugCUUGGCACUCGCGAACACCGCGaucacuuccaauaucgauccgcggaguuagccagugucaaccaaauggauguuugagacuu
(((((((.((((.(((.((((((((.((.(((.((((((((............))).))))).))).)).)))))))).))).)))).)...).)))))

Structure
     - --- u    a   C        C  G   A     -   acuuc 
aaguc c   c uccg uug UUGGCACU GC AAC CCGCG auc     c
||||| |   | |||| ||| |||||||| || ||| ||||| |||      
uucag g   g aggu aac aacuguga cg uug ggcgc uag     a
     a uuu u    a   c        c  a   a     c   cuaua 


Annotation confidence Not enough data
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Genome context
chrIV: 6048840-6048938 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cbr-mir-790-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-790

Accession MIMAT0004292
Description Caenorhabditis briggsae cbr-miR-790 mature miRNA
Sequence 17 - CUUGGCACUCGCGAACACCGCG - 38
Evidence not_experimental

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207