miRBase entry: cbr-mir-359

Stem-loop cbr-mir-359

Accession

MI0005431

Description

Caenorhabditis briggsae cbr-mir-359 precursor miRNA

Gene family

MIPF0000371; mir-359

Sequence

gacaaaucuucauccgucagagcauaucucaguuacacaacuuccuaaauagugUCACUGGUUAUCCUCUGUCGAAaugaagauguc
((((..(((((((.((.(((((.(((.(.((((.((((.............)))).))))).))).))))).))..)))))))))))

Structure

    aa       -c  u     c   u u    u    aacuu 
gaca  ucuucau  cg cagag aua c cagu acac     c
||||  |||||||  || ||||| ||| | |||| ||||     c
cugu  agaagua  GC GUCUC UAU G GUCA Ugug     u
    --       AA  U     C   U -    C    auaaa

Annotation confidence Not enough data

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Genome context

chrX: 8054854-8054940 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbr-mir-359

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-359

Accession	MIMAT0004298
Description	Caenorhabditis briggsae cbr-miR-359 mature miRNA
Sequence	55 - UCACUGGUUAUCCUCUGUCGAA - 76
Evidence	not_experimental

References

PubMed ID: 17174894
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
"Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
"Cell (2006) 127:1193-1207