miRBase entry: ath-MIR859

Stem-loop ath-MIR859


Accession
MI0005436
Description
Arabidopsis thaliana ath-MIR859 precursor miRNA
Gene family
MIPF0001191; MIR859

Literature search
3 open access papers mention ath-MIR859
(5 sentences)

Sequence

aaagguagaugucgaaaUCUCUCUGUUGUGAAGUCAAAcaugaguaugaauuaacauuaauggaucuuuuugauucauaauacucauguuugguuucacaguagauagauaucgacgucuaucuuu
(((((((((((((((.((((.((((((((((((((((((((((((((............(((((((.....))))))).)))))))))))))))))))))))))).)))).)))))))))))))))

Structure
               a    C                          gaauuaacauua       u 
aaagguagaugucga aUCU UCUGUUGUGAAGUCAAAcaugaguau            auggauc u
||||||||||||||| |||| ||||||||||||||||||||||||||            ||||||| u
uuucuaucugcagcu uaga agaugacacuuugguuuguacucaua            uacuuag u
               a    u                          -----------a       u 


Annotation confidence Not enough data
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Genome context
chr1: 22149718-22149843 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR859
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR859

Accession MIMAT0004303
Description Arabidopsis thaliana ath-miR859 mature miRNA
Sequence 18 - UCUCUCUGUUGUGAAGUCAAA - 38
Evidence experimental
454 [1], cloned [1]

References

  1. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219