Stem-loop sequence ath-MIR860

Accession MI0005437
Description Arabidopsis thaliana miR860 stem-loop
Gene family MIPF0001176; MIR860
Stem-loop 
  g             c                         g    a ua   --     cu 
au ucuugguuaaauu aauauauauaguccaaucuauugaa uacu g  cac  cagcu  a
|| ||||||||||||| ||||||||||||||||||||||||| |||| |  |||  |||||   
ua agaaucaguuuaa uuauauguaucagguuagauaacuu auga u  gug  gucga  a
  g             a                         g    a gg   ua     au
Get sequence
Deep sequencing
60 reads, 8 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr5: 9098791-9098916 [+]
intergenic

Mature sequence ath-miR860

Accession MIMAT0004304
Sequence

86 -  

ucaauagauuggacuauguau

 - 106

Get sequence
Deep sequencing 55 reads, 8 experiments
Evidence experimental; 454 [1], cloned [1], Solexa [2]
Validated targets

References

1
PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).
2
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).