miRBase entry: ath-MIR845b

Stem-loop ath-MIR845b


Accession
MI0005444
Description
Arabidopsis thaliana ath-MIR845b precursor miRNA
Gene family
MIPF0000369; MIR845_1

Literature search
2 open access papers mention ath-MIR845b
(4 sentences)

Sequence

agucgguuuccaucacgucaauugcuaucagagcaacgcaugauguauaauaacuaagcgUCGCUCUGAUACCAAAUUGAUGcaauggaaacaucgauu
.((((((((((((..(((((((((.(((((((((.((((..................)))).))))))))).).))))))))..))))))))..)))).

Structure
a    --        ca        - c         a    augaugua 
 gucg  guuuccau  cgucaauu g uaucagagc acgc        u
 ||||  ||||||||  |||||||| | ||||||||| ||||         
 uagc  caaaggua  GUAGUUAA C AUAGUCUCG Ugcg        a
u    ua        ac        A C         C    aaucaaua 


Annotation confidence Not enough data
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Genome context
chr4: 12214069-12214167 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR845b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR845b

Accession MIMAT0004317
Description Arabidopsis thaliana ath-miR845b mature miRNA
Sequence 61 - UCGCUCUGAUACCAAAUUGAUG - 82
Evidence experimental
454 [1], cloned [1]

References

  1. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219