miRBase entry: ath-MIR867

Stem-loop ath-MIR867


Accession
MI0005445
Description
Arabidopsis thaliana ath-MIR867 precursor miRNA

Literature search
1 open access papers mention ath-MIR867
(2 sentences)

Sequence

acacauaaaacuaguauauugccUUGAACAUGGUUUAUUAGGAAagacaugagaacauaucugaacauaguuuuuccuuauauacaauguucaaaguaaugaauuaguuuuauuuugu
....(((((((((((.((((((.((((((((.((.(((.(((((((((((((((.....)))...))).))))))))).))).)).)))))))).)))))).))))))))))).....

Structure
-acac           a      c        G  U   U         -   ---   a 
     auaaaacuagu uauugc UUGAACAU GU UAU AGGAAagac aug   aga c
     ||||||||||| |||||| |||||||| || ||| ||||||||| |||   ||| a
     uauuuugauua guaaug aacuugua ca aua uccuuuuug uac   ucu u
uguuu           a      a        a  u   u         a   aag   a 


Annotation confidence Not enough data
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Genome context
chr4: 11375364-11375481 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR867
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR867

Accession MIMAT0004318
Description Arabidopsis thaliana ath-miR867 mature miRNA
Sequence 24 - UUGAACAUGGUUUAUUAGGAA - 44
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219