Stem-loop sequence bta-mir-15a

Accession

MI0005458 (change log)

Description

Bos taurus miR-15a stem-loop

Gene family

MIPF0000006; mir-15

Literature search

17 open access papers mention bta-mir-15a
(31 sentences)

Stem-loop

        gaguaaa ua        ua          ga  u 
5' ccuug       g  gcagcaca  augguuugug  uu u
   |||||       |  ||||||||  ||||||||||  || g
3' ggaac       c  cgucgugu  uaccggacgu  aa a
        auaaaaa uc        ua          gg  a 

Deep sequencing

27318 reads, 361 reads per million, 75 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr12: 19660532-19660614 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-15a

• bta-mir-15a: chr12: 19660532-19660614 [-]
• bta-mir-16a: chr12: 19660386-19660474 [-]

Database links

• EntrezGene:MIR15A
• RNAcentral:URS0000171CD1_9913
• miRBase Tracker:MI0005458

Mature sequence bta-miR-15a

• Accession: MIMAT0004334
• Sequence: 14 - uagcagcacauaaugguuugu - 34
• Deep sequencing: 27283 reads, 75 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-15a

References

1. PMID:17306260 "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland" Gu Z, Eleswarapu S, Jiang H FEBS Lett. 581:981-988(2007).