Stem-loop sequence bta-mir-19a

Accession

MI0005460 (change log)

Description

Bos taurus miR-19a stem-loop

Gene family

MIPF0000011; mir-19

Literature search

13 open access papers mention bta-mir-19a
(34 sentences)

Stem-loop

       u  u                 --      ---    ag 
5' gcag cc cuguuaguuuugcauag  uugcac   uaca  a
   |||| || |||||||||||||||||  ||||||   ||||  a
3' cguc gg gguagucaaaacguauc  aacgug   augu  g
       c  u                 ua      uug    aa 

Deep sequencing

30831 reads, 308 reads per million, 76 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr12: 66421518-66421599 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-19a

• bta-mir-17: chr12: 66421236-66421319 [+]
• bta-mir-18a: chr12: 66421379-66421449 [+]
• bta-mir-19a: chr12: 66421518-66421599 [+]
• bta-mir-20a: chr12: 66421687-66421757 [+]
• bta-mir-19b: chr12: 66421815-66421901 [+]
• bta-mir-92a-1: chr12: 66421937-66422014 [+]

Database links

• EntrezGene:MIR19A
• miRBase Tracker:MI0005460

Mature sequence bta-miR-19a

• Accession: MIMAT0004336
• Sequence: 49 - ugugcaaaucuaugcaaaacuga - 71
• Deep sequencing: 30766 reads, 76 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-19a

References

1. PMID:17306260 "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland" Gu Z, Eleswarapu S, Jiang H FEBS Lett. 581:981-988(2007).