miRBase entry: bta-mir-660

Stem-loop bta-mir-660


Accession
MI0005468
Description
Bos taurus bta-mir-660 precursor miRNA
Gene family
MIPF0000113; mir-188

Literature search
2 open access papers mention bta-mir-660
(5 sentences)

Sequence

81796 reads, 1229 reads per million, 77 experiments
cugcuccuucucccgUACCCAUUGCAUAUCGGAGCUGugaauucucaaagcaccuccuaugugcauggauuacaggaggg
........(((((.(((.((((.((((((.((((.(((...........))).)))).))))))))))..))).))))).

Structure
cugcuccu     c   -C    U      C    C   gaau 
        ucucc gUA  CCAU GCAUAU GGAG UGu    u
        ||||| |||  |||| |||||| |||| |||    c
        ggagg cau  ggua cgugua ccuc acg    u
-------g     a   ua    -      u    c   aaac 


Annotation confidence Not enough data
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Genome context
chrX: 93950762-93950841 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-660
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-660

Accession MIMAT0004344
Description Bos taurus bta-miR-660 mature miRNA
Sequence 16 - UACCCAUUGCAUAUCGGAGCUG - 37
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988