miRBase entry: mmu-mir-105

Stem-loop mmu-mir-105


Accession
MI0005481
Symbol
MGI: Mir105
Description
Mus musculus mmu-mir-105 precursor miRNA
Gene family
MIPF0000074; mir-105

Literature search
9 open access papers mention mmu-mir-105
(109 sentences)

Sequence

ugcauuuuagCCAAGUGCUCAGAUGCUUGUGGUggcugcuuaugcaccacgaaugcuugagcaugugcuaugguaccuac
(((....((((...((((((((..((((((((((..........))))))))..))))))))))..))))..))).....

Structure
-----   auuu    CAA        AU  --        gcug 
     ugc    uagC   GUGCUCAG  GC  UUGUGGUg    c
     |||    ||||   ||||||||  ||  ||||||||     
     aug    aucg   uacgaguu  cg  agcaccac    u
caucc   --gu    -ug        --  ua        guau 


Annotation confidence Not enough data
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Genome context
chrX: 72591500-72591579 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-105
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-105

Accession MIMAT0004856
Description Mus musculus mmu-miR-105 mature miRNA
Sequence 11 - CCAAGUGCUCAGAUGCUUGUGGU - 33
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471