Stem-loop sequence mmu-mir-193b

Accession

MI0005484 (change log)

Symbol

MGI:Mir193b

Description

Mus musculus miR-193b stem-loop

Gene family

MIPF0000082; mir-193

Literature search

67 open access papers mention mmu-mir-193b
(317 sentences)

Stem-loop

   -     -    u    gu    a    g  a  ag uug 
5'  ggccc agaa cggg  uuug gggc ag ug  u   u
    ||||| |||| ||||  |||| |||| || ||  |   g
3'  cuggg uuuu gccc  aaac cccg uc ac  a   u
   a     g    c    ug    a    g  a  cu uuu 

Deep sequencing

42794 reads, 260 reads per million, 102 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr16: 13449523-13449601 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-193b

• mmu-mir-193b: chr16: 13449523-13449601 [+]
• mmu-mir-365-1: chr16: 13453840-13453926 [+]

Database links

• EntrezGene:Mir193b
• MGI:Mir193b
• RNAcentral:URS000075D5F8_10090
• miRBase Tracker:MI0005484

Mature sequence mmu-miR-193b-5p

• Accession: MIMAT0017271
• Previous IDs: mmu-miR-193b*
• Sequence: 11 - cgggguuuugagggcgagauga - 32
• Deep sequencing: 3384 reads, 77 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00000E1DC5_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-193b-5p
  • miRDB:mmu-miR-193b-5p

Mature sequence mmu-miR-193b-3p

• Accession: MIMAT0004859
• Previous IDs: mmu-miR-193b
• Sequence: 48 - aacuggcccacaaagucccgcu - 69
• Deep sequencing: 39409 reads, 101 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS0000423E7F_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-193b-3p
  • miRDB:mmu-miR-193b-3p
  • microrna.org:mmu-miR-193b-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).