Stem-loop sequence mmu-mir-466b-1

Accession

MI0005502 (change log)

Symbol

MGI:Mir466b-1

Description

Mus musculus miR-466b-1 stem-loop

Gene family

MIPF0000208; mir-466

Literature search

28 open access papers mention mmu-mir-466b-1
(90 sentences)

Stem-loop

   --u         -g          ac     c       aa 
5'    guauguguu  augugugugu  augua augugug  u
      |||||||||  ||||||||||  ||||| |||||||  a
3'    uauacacag  uacacacgca  uacau uacauau  u
   gag         aa          ca     a       ag 

Deep sequencing

31378 reads, 121 reads per million, 101 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10474219-10474300 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000177988 ; Mir466b-1-201; exon 1

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-466b-1

• mmu-mir-466m: chr2: 10466663-10466746 [+]
• mmu-mir-466f-1: chr2: 10466944-10467037 [+]
• mmu-mir-669f: chr2: 10467229-10467349 [+]
• mmu-mir-669e: chr2: 10467495-10467613 [+]
• mmu-mir-669b: chr2: 10467790-10467886 [+]
• mmu-mir-669d: chr2: 10468343-10468463 [+]
• mmu-mir-466f-2: chr2: 10468675-10468768 [+]
• mmu-mir-669l: chr2: 10468971-10469068 [+]
• mmu-mir-669d-2: chr2: 10471644-10471729 [+]
• mmu-mir-466f-3: chr2: 10471953-10472046 [+]
• mmu-mir-297a-2: chr2: 10472254-10472343 [+]
• mmu-mir-466o: chr2: 10472540-10472623 [+]
• mmu-mir-467c: chr2: 10473931-10474027 [+]
• mmu-mir-466b-1: chr2: 10474219-10474300 [+]
• mmu-mir-669a-3: chr2: 10474433-10474541 [+]
• mmu-mir-669k: chr2: 10475300-10475426 [+]
• mmu-mir-467a-1: chr2: 10476346-10476418 [+]
• mmu-mir-466b-8: chr2: 10476628-10476713 [+]
• mmu-mir-669a-1: chr2: 10476853-10476949 [+]
• mmu-mir-669g: chr2: 10477150-10477272 [+]
• mmu-mir-669j: chr2: 10477910-10478030 [+]
• mmu-mir-467a-2: chr2: 10478798-10478880 [+]
• mmu-mir-466e: chr2: 10479088-10479171 [+]
• mmu-mir-669a-4: chr2: 10479315-10479401 [+]
• mmu-mir-467b: chr2: 10481248-10481320 [+]
• mmu-mir-466c-1: chr2: 10481534-10481617 [+]
• mmu-mir-669a-5: chr2: 10481761-10481847 [+]
• mmu-mir-467a-3: chr2: 10483678-10483760 [+]
• mmu-mir-466c-2: chr2: 10483966-10484055 [+]
• mmu-mir-669a-6: chr2: 10484196-10484282 [+]

Database links

• EntrezGene:Mir466b-1
• MGI:Mir466b-1
• RNAcentral:URS0000796645_10090
• miRBase Tracker:MI0005502

Mature sequence mmu-miR-466b-5p

• Accession: MIMAT0004875
• Sequence: 10 - ugauguguguguacauguacau - 31
• Deep sequencing: 63426 reads, 97 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000723A4_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-466b-5p
  • miRDB:mmu-miR-466b-5p
  • microrna.org:mmu-miR-466b-5p

Mature sequence mmu-miR-466b-3p

• Accession: MIMAT0004876
• Sequence: 51 - auacauacacgcacacauaaga - 72
• Deep sequencing: 183579 reads, 102 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000004859F_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-466b-3p
  • miRDB:mmu-miR-466b-3p
  • microrna.org:mmu-miR-466b-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).