Stem-loop sequence mmu-mir-466c-1

Accession

MI0005505

Previous IDs

mmu-mir-466c

Symbol

MGI:Mir466c-1

Description

Mus musculus miR-466c-1 stem-loop

Gene family

MIPF0000208; mir-466

Stem-loop

--g          -g           c     ca      aau 
   uauauguguu  augugugugug augua  uaugug   a
   ||||||||||  ||||||||||| |||||  ||||||   u
   guauacacag  uacacacgcac uacau  auacau   g
cga          aa           a     --      aua 

Deep sequencing

11030 reads, 87 experiments

Genome context

• Coordinates (GRCm38): chr2: 10481534-10481617 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000180005 ; AL772216.52-201; exon 1

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-466c-1

• mmu-mir-669d-2: chr2: 10471644-10471729 [+]
• mmu-mir-466f-3: chr2: 10471953-10472046 [+]
• mmu-mir-297a-2: chr2: 10472254-10472343 [+]
• mmu-mir-466o: chr2: 10472540-10472623 [+]
• mmu-mir-467c: chr2: 10473931-10474027 [+]
• mmu-mir-466b-1: chr2: 10474219-10474300 [+]
• mmu-mir-669a-3: chr2: 10474433-10474541 [+]
• mmu-mir-669k: chr2: 10475300-10475426 [+]
• mmu-mir-467a-1: chr2: 10476346-10476418 [+]
• mmu-mir-466b-8: chr2: 10476628-10476713 [+]
• mmu-mir-669a-1: chr2: 10476853-10476949 [+]
• mmu-mir-669g: chr2: 10477150-10477272 [+]
• mmu-mir-669j: chr2: 10477910-10478030 [+]
• mmu-mir-467a-2: chr2: 10478798-10478880 [+]
• mmu-mir-466e: chr2: 10479088-10479171 [+]
• mmu-mir-669a-4: chr2: 10479315-10479401 [+]
• mmu-mir-467b: chr2: 10481248-10481320 [+]
• mmu-mir-466c-1: chr2: 10481534-10481617 [+]
• mmu-mir-669a-5: chr2: 10481761-10481847 [+]
• mmu-mir-467a-3: chr2: 10483678-10483760 [+]
• mmu-mir-466c-2: chr2: 10483966-10484055 [+]
• mmu-mir-669a-6: chr2: 10484196-10484282 [+]
• mmu-mir-467a-4: chr2: 10486135-10486217 [+]
• mmu-mir-466b-4: chr2: 10486423-10486512 [+]
• mmu-mir-669a-7: chr2: 10486653-10486739 [+]
• mmu-mir-467a-5: chr2: 10488599-10488681 [+]
• mmu-mir-466b-5: chr2: 10488887-10488974 [+]
• mmu-mir-669p-1: chr2: 10489116-10489202 [+]
• mmu-mir-467a-6: chr2: 10491048-10491130 [+]

Database links

• ENTREZGENE: 100316646;Mir466c
• MGI: 3718530;Mir466c-1

Mature sequence mmu-miR-466c-5p

• Accession: MIMAT0004877
• Sequence: 11 - ugaugugugugugcauguacauau - 34
• Deep sequencing: 8730 reads, 71 experiments
• Evidence: experimental; cloned [1], Solexa [2-3]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-466c-5p
  • MICRORNA.ORG:mmu-miR-466c-5p
  • MIRDB:mmu-miR-466c-5p
  • RNA22-MMU:mmu-miR-466c-5p
  • TARGETSCAN-VERT:mmu-miR-466c-5p

Mature sequence mmu-miR-466c-3p

• Accession: MIMAT0004878
• Sequence: 52 - auacauacacgcacacauaaga - 73
• Deep sequencing: 12990 reads, 77 experiments
• Evidence: experimental; cloned [1], Solexa [2-3]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-466c-3p
  • MICRORNA.ORG:mmu-miR-466c-3p
  • MIRDB:mmu-miR-466c-3p
  • RNA22-MMU:mmu-miR-466c-3p
  • TARGETSCAN-VERT:mmu-miR-466c-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).