Stem-loop sequence mmu-mir-466f-3

Accession MI0005509
Symbol MGI:Mir466f-3
Description Mus musculus miR-466f-3 stem-loop
Gene family MIPF0000316; mir-467
Stem-loop 
---ca        ua          c     --ca           gaa 
     uguguguu  cgugugugug augug    uguguguauau   u
     ||||||||  |||||||||| |||||    |||||||||||    
     acacacaa  gcacgcacac uacac    acauacauaug   a
cacac        -c          a     acac           uau
Get sequence
Deep sequencing
4782 reads, 86 experiments
Comments

Landgraf et al. identify several offset sequences which map to the 3' arm of the miR-466f hairpin precursors [1]. One sequence consistent with all three putative hairpin loci is shown here.

Genome context
Coordinates (GRCm38) Overlapping transcripts
chr2: 10471953-10472046 [+]
sense
OTTMUST00000026263 ; Sfmbt2-001; intron 10
ENSMUST00000041105 ; Sfmbt2-001; intron 10
ENSMUST00000116594 ; Sfmbt2-201; intron 11
Clustered miRNAs
< 10kb from mmu-mir-466f-3
mmu-mir-466m chr2: 10466663-10466746 [+]
mmu-mir-466f-1 chr2: 10466944-10467037 [+]
mmu-mir-669f chr2: 10467229-10467349 [+]
mmu-mir-669e chr2: 10467495-10467613 [+]
mmu-mir-669b chr2: 10467790-10467886 [+]
mmu-mir-669d chr2: 10468343-10468463 [+]
mmu-mir-466f-2 chr2: 10468675-10468768 [+]
mmu-mir-669l chr2: 10468971-10469068 [+]
mmu-mir-669d-2 chr2: 10471644-10471729 [+]
mmu-mir-466f-3 chr2: 10471953-10472046 [+]
mmu-mir-297a-2 chr2: 10472254-10472343 [+]
mmu-mir-466o chr2: 10472540-10472623 [+]
mmu-mir-467c chr2: 10473931-10474027 [+]
mmu-mir-466b-1 chr2: 10474219-10474300 [+]
mmu-mir-669a-3 chr2: 10474433-10474541 [+]
mmu-mir-669k chr2: 10475300-10475426 [+]
mmu-mir-467a-1 chr2: 10476346-10476418 [+]
mmu-mir-466b-8 chr2: 10476628-10476713 [+]
mmu-mir-669a-1 chr2: 10476853-10476949 [+]
mmu-mir-669g chr2: 10477150-10477272 [+]
mmu-mir-669j chr2: 10477910-10478030 [+]
mmu-mir-467a-2 chr2: 10478798-10478880 [+]
mmu-mir-466e chr2: 10479088-10479171 [+]
mmu-mir-669a-4 chr2: 10479315-10479401 [+]
mmu-mir-467b chr2: 10481248-10481320 [+]
mmu-mir-466c-1 chr2: 10481534-10481617 [+]
mmu-mir-669a-5 chr2: 10481761-10481847 [+]
Database links

Mature sequence mmu-miR-466f-5p

Accession MIMAT0004881
Sequence

11 -  

uacgugugugugcaugugcaug

 - 32

Get sequence
Deep sequencing 3530 reads, 60 experiments
Evidence experimental; cloned [1], Solexa [2]
Predicted targets

Mature sequence mmu-miR-466f-3p

Accession MIMAT0004882
Sequence

55 -  

cauacacacacacauacacac

 - 75

Get sequence
Deep sequencing 9694 reads, 76 experiments
Evidence experimental; cloned [1], Solexa [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).