Stem-loop sequence mmu-mir-466h

Accession

MI0005511 (change log)

Symbol

MGI:Mir466h

Description

Mus musculus miR-466h stem-loop

Gene family

MIPF0000316; mir-467

Literature search

26 open access papers mention mmu-mir-466h
(62 sentences)

Stem-loop

   --ugua            ca     uu         ugaau 
5'       uauuugugugug  ugugc  guguguaug     a
         ||||||||||||  |||||  |||||||||     u
3'       guaaacacacac  acacg  cacgcauac     a
   acgaac            ac     --         uauau 

Deep sequencing

5180 reads, 3.06e+03 reads per million, 153 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10514891-10514971 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-466h

• mmu-mir-467e: chr2: 10505721-10505807 [+]
• mmu-mir-466p: chr2: 10506006-10506094 [+]
• mmu-mir-467d: chr2: 10507630-10507714 [+]
• mmu-mir-466a: chr2: 10507918-10507990 [+]
• mmu-mir-297c: chr2: 10509016-10509113 [+]
• mmu-mir-669c: chr2: 10509296-10509404 [+]
• mmu-mir-669a-2: chr2: 10510164-10510260 [+]
• mmu-mir-297b: chr2: 10511667-10511775 [+]
• mmu-mir-466d: chr2: 10511967-10512062 [+]
• mmu-mir-669m-1: chr2: 10512790-10512887 [+]
• mmu-mir-669m-2: chr2: 10513434-10513531 [+]
• mmu-mir-466n: chr2: 10513741-10513834 [+]
• mmu-mir-669o: chr2: 10514300-10514395 [+]
• mmu-mir-466g: chr2: 10514595-10514674 [+]
• mmu-mir-466h: chr2: 10514891-10514971 [+]
• mmu-mir-297a-3: chr2: 10515820-10515921 [+]
• mmu-mir-466l: chr2: 10516097-10516217 [+]
• mmu-mir-297a-4: chr2: 10517067-10517164 [+]
• mmu-mir-669i: chr2: 10517604-10517730 [+]
• mmu-mir-669h: chr2: 10518155-10518279 [+]

Database links

• EntrezGene:Mir466h
• MGI:Mir466h
• RNAcentral:URS000075CDAC_10090
• miRBase Tracker:MI0005511

Mature sequence mmu-miR-466h-5p

• Accession: MIMAT0004884
• Previous IDs: mmu-miR-466h
• Sequence: 11 - ugugugcaugugcuugugugua - 32
• Deep sequencing: 2633 reads, 92 experiments
• Evidence: experimental; cloned [1], 454 [2], Illumina [4]
• Database links:
  • RNAcentral:URS00003602F7_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-466h-5p
  • miRDB:mmu-miR-466h-5p
  • microrna.org:mmu-miR-466h-5p

Mature sequence mmu-miR-466h-3p

• Accession: MIMAT0017274
• Sequence: 50 - uacgcacgcacacacacac - 68
• Deep sequencing: 2486 reads, 141 experiments
• Evidence: experimental; 454 [3], Illumina [4]
• Database links:
  • RNAcentral:URS00000AC166_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-466h-3p
  • miRDB:mmu-miR-466h-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
3. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).